Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs77421676 chr4:70040810 A/C 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs7743652 chr6:25502076 G/A 0.000185 116 38.13 46.27 22.05 KM Plot
THYM rs77459091 chr13:106581671 C/T 8.63E-5 117 38.23 56.8 28.43 KM Plot
THYM rs77497309 chr2:30747097 C/T 1.86E-8 117 36.4 50.1 33.13 KM Plot
THYM rs7750131 chr6:26489006 G/C 2.15E-11 119 5.07 38.38 42.73 KM Plot
THYM rs7756165 chr6:117144925 A/G 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs7758968 chr6:3265426 A/C 0 119 4.13 42.25 38.58 KM Plot
THYM rs77590522 chr18:33629410 C/G 0.000144 118 49.75 35 51.23 KM Plot
THYM rs77623109 chr1:101804815 A/G 5.96E-13 119 46.43 26.88 6 KM Plot
THYM rs77708326 chr11:119794526 T/C 1.5E-8 118 40.67 42.53 12.63 KM Plot
THYM rs77716531 chr4:70039275 T/C 1.03E-12 116 39.75 35 6 KM Plot
THYM rs77726154 chr8:131728584 G/C 0 119 42.9 27.2 2.9 KM Plot
THYM rs77779446 chr2:10918463 G/A 0.000183 115 42.9 38.58 62.72 KM Plot
THYM rs77785653 chr4:70082966 A/G 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs7779430 chr7:45299154 C/T 2.29E-5 119 50.07 35.4 14.9 KM Plot